Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAP8L_chr19_15375050_15423988	0/0	t0002	138	1	0	0	0	0	1	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8_chr19_15348385_15384787	0/0	t0001	1583	133	43	31	43	2	14	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/1	t0002	1584	60	1	9	39	2	8	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	1/0	t0003	1587	39	17	6	2	3	10	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0004	1583	19	7	2	3	1	6	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0005	1585	11	11	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0006	1583	7	0	7	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0007	1583	6	6	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0008	1585	5	1	4	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0009	1585	2	2	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0010	1585	2	1	1	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0011	1583	1	0	0	1	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	t0012	1583	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP9_chr7_91935862_92115673	0/1	t0001	753	206	43	30	114	2	16	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	1/0	t0002	753	97	39	18	28	1	10	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	t0003	756	3	0	2	0	1	0	copy fasta	AKAP9	chr7	91935862	92115673
AKIP1_chr11_8906189_8925079	1/0	t0001	641	288	78	34	133	8	34	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/1	t0002	641	121	19	26	57	8	10	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	t0003	641	5	0	2	0	0	3	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	t0004	641	1	1	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	t0005	641	1	0	0	1	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	t0006	641	1	0	0	1	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	t0007	641	1	0	0	0	0	1	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	t0008	641	1	1	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	t0009	641	1	1	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIRIN1_chr1_38986276_39011059	0/0	t0001	2110	132	25	16	72	3	16	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/1	t0002	2110	78	10	11	40	6	10	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0003	2113	44	0	16	19	4	5	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	1/0	t0004	2110	42	14	1	23	0	3	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0005	2111	34	11	11	4	2	6	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0006	2111	22	1	10	10	0	1	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0007	2112	16	16	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0008	2110	9	9	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0009	2114	7	1	0	6	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0010	2110	5	0	0	5	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0011	2110	4	0	0	4	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0012	2111	3	3	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0013	2112	2	2	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0014	2110	2	0	0	1	0	1	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0015	2110	2	0	1	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0016	2113	2	0	0	0	0	2	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0017	2111	2	0	1	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0018	2113	2	1	1	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0019	2110	1	1	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0020	2112	1	0	1	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0021	2110	1	1	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0022	2113	1	0	1	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0023	2110	1	0	0	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0024	2112	1	1	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0025	2110	1	0	1	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059