JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF2_chr4_122821831_122903236	0/0	t0025	6184	1	0	1	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0026	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0027	6181	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0028	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0029	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0030	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0031	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	1/0	t0032	6185	1	0	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0033	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0034	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0035	6184	1	0	0	0	0	1	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0036	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0037	6184	1	0	0	1	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0038	6185	1	0	1	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0039	6184	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0040	6185	1	0	0	0	0	1	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0041	6181	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0042	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0043	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0044	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0045	6185	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0046	6185	1	0	1	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0047	6184	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0048	6184	1	0	0	1	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0049	6184	1	0	1	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF3_chr11_69804968_69824416	1/1	t0001	821	406	85	77	186	16	40	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	t0002	821	9	5	3	0	0	1	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	t0003	821	2	0	0	0	0	2	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	t0004	821	2	2	0	0	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	t0005	821	1	0	0	0	0	1	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	t0006	821	1	1	0	0	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	t0007	821	1	1	0	0	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF4_chr11_69766022_69780341	0/0	t0001	2545	111	16	43	29	8	15	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/1	t0002	2545	78	5	14	49	4	5	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0003	2546	77	1	6	61	2	7	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0004	2545	44	19	6	17	1	1	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	1/0	t0005	2545	43	32	3	5	0	2	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0006	2545	13	1	1	4	0	7	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0007	2546	10	0	0	8	0	2	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0008	2546	6	0	0	6	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0009	2546	5	3	0	0	0	2	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0010	2546	5	0	0	5	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0011	2545	4	4	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0012	2545	3	2	1	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0013	2545	3	0	0	3	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0014	2545	2	2	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0015	2546	2	0	0	2	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0016	2545	2	0	0	2	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0017	2545	2	2	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0018	2545	2	0	0	2	0	0	copy fasta	FGF4	chr11	69766022	69780341