JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF4_chr11_69766022_69780341	0/0	t0019	2545	2	2	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0020	2545	2	0	0	0	0	2	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0021	2546	2	0	1	0	1	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0022	2546	1	0	0	0	0	1	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0023	2545	1	0	0	1	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0024	2545	1	0	0	0	0	1	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0025	2545	1	0	1	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0026	2545	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0027	2545	1	0	0	0	0	1	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0028	2545	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0029	2545	1	0	0	1	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0030	2545	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0031	2545	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0032	2545	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0033	2545	1	0	0	1	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0034	2545	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0035	2545	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0036	2546	1	0	0	1	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	t0037	2546	1	0	0	1	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF5_chr4_80261664_80296017	0/0	t0001	4507	131	5	31	73	7	15	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	1/0	t0002	4507	44	2	3	28	1	9	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0003	4507	34	1	9	17	3	4	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0004	4507	25	1	7	14	1	2	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0005	4507	16	2	1	12	0	1	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0006	4507	16	1	4	4	0	7	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0007	4507	12	1	3	8	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0008	4508	12	12	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0009	4507	11	2	0	9	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0010	4508	8	0	2	5	0	1	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0011	4507	7	0	1	4	0	2	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0012	4507	6	0	2	4	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0013	4508	5	2	0	2	0	1	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0014	4508	5	4	1	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0015	4507	5	3	0	2	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0016	4506	4	0	0	4	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0017	4509	4	4	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0018	4507	4	0	0	4	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0019	4507	4	1	2	0	1	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0020	4507	3	0	0	3	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0021	4508	3	2	0	1	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0022	4507	3	0	0	3	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0023	4507	3	1	2	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0024	4507	2	0	0	2	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0025	4507	2	0	0	2	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0026	4507	2	2	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0027	4507	2	2	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0028	4507	2	0	0	0	2	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0029	4508	2	2	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0030	4508	2	2	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0031	4509	2	2	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017