JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF5_chr4_80261664_80296017	0/0	t0082	4508	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0083	4507	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0084	4509	1	0	1	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0085	4507	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0086	4506	1	0	0	1	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0087	4507	1	0	0	1	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0088	4507	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0089	4508	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0090	4509	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0091	4509	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0092	4507	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0093	4509	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0094	4507	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0095	4507	1	0	1	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0096	4508	1	0	1	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0097	4508	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0098	4507	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	t0099	4507	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF6_chr12_4429142_4450815	1/1	t0001	319	408	93	80	175	16	42	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	t0002	319	41	0	0	41	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	t0003	319	1	1	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF7_chr15_49418242_49493775	1/0	t0001	4737	81	34	11	26	4	5	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0002	4733	72	2	17	39	2	12	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0003	4737	38	1	2	33	0	2	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/1	t0004	4737	30	3	10	2	4	10	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0005	4737	23	1	6	15	0	1	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0006	4737	21	0	1	15	0	5	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0007	4734	15	13	1	0	0	1	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0008	4737	13	0	1	9	0	3	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0009	4737	11	11	0	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0010	4737	10	1	1	2	1	5	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0011	4734	7	1	0	6	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0012	4737	5	4	1	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0013	4739	4	4	0	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0014	4737	4	4	0	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0015	4737	4	4	0	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0016	4734	3	0	0	3	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0017	4737	3	0	1	0	1	1	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0018	4737	2	0	1	0	0	1	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0019	4737	2	0	0	0	2	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0020	4736	2	0	0	0	0	2	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0021	4733	1	0	1	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0022	4733	1	0	0	1	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0023	4737	1	1	0	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0024	4737	1	1	0	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0025	4737	1	1	0	0	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0026	4737	1	0	0	0	0	1	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0027	4733	1	0	0	0	0	1	copy fasta	FGF7	chr15	49418242	49493775
FGF7_chr15_49418242_49493775	0/0	t0028	4737	1	0	0	1	0	0	copy fasta	FGF7	chr15	49418242	49493775
FGF8_chr10_101765109_101781114	1/0	t0001	435	212	70	42	78	7	14	copy fasta	FGF8	chr10	101765109	101781114