JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF8_chr10_101765109_101781114	0/1	t0002	434	105	4	21	58	5	16	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	t0003	436	21	15	2	4	0	0	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	t0004	435	11	0	0	11	0	0	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	t0005	423	3	0	1	0	1	1	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	t0006	434	3	0	2	0	0	1	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	t0007	434	3	0	0	3	0	0	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	t0008	434	1	1	0	0	0	0	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	t0009	434	1	0	0	0	1	0	copy fasta	FGF8	chr10	101765109	101781114
FGF9_chr13_21666073_21709498	0/1	t0001	3904	117	10	26	67	5	8	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0002	3906	87	1	16	53	5	12	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0003	3908	14	12	2	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0004	3910	9	7	0	0	1	1	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0005	3906	6	0	1	2	0	3	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0006	3911	6	6	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0007	3900	5	0	0	5	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0008	3902	5	2	1	1	0	1	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0009	3912	5	5	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0010	3905	5	3	1	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0011	3909	5	4	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0012	3903	5	0	2	1	0	2	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0013	3904	4	4	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0014	3915	4	3	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0015	3912	4	0	2	0	1	1	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0016	3920	3	2	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0017	3905	3	0	0	3	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0018	3911	3	1	0	0	1	1	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0019	3906	3	0	0	0	0	3	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0020	3906	3	0	1	0	1	1	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0021	3908	3	0	2	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0022	3904	2	0	0	1	0	1	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0023	3904	2	0	0	0	0	2	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0024	3908	2	2	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0025	3908	2	1	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0026	3904	2	1	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0027	3907	2	2	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0028	3907	2	2	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0029	3909	2	2	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0030	3901	2	1	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0031	3906	2	0	0	2	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0032	3907	1	0	0	0	0	1	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0033	3909	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0034	3906	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0035	3907	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0036	3908	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0037	3904	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0038	3890	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0039	3904	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0040	3904	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0041	3903	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0042	3904	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498