JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF9_chr13_21666073_21709498	0/0	t0043	3904	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0044	3904	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0045	3904	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0046	3905	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0047	3906	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0048	3908	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0049	3910	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0050	3906	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0051	3900	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0052	3904	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0053	3904	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	1/0	t0054	3904	1	0	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0055	3904	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0056	3905	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0057	3909	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0058	3913	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0059	3907	1	0	0	0	0	1	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0060	3902	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0061	3904	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0062	3906	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0063	3906	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0064	3906	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0065	3912	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0066	3906	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0067	3908	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0068	3909	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0069	3911	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0070	3913	1	1	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0071	3904	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0072	3904	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0073	3906	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	t0074	3904	1	0	0	1	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGFBP1_chr4_15930577_15943740	0/0	t0001	647	238	43	43	130	8	14	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	1/1	t0002	647	139	23	26	74	3	11	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0003	647	91	24	18	19	7	23	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0004	647	2	2	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0005	647	2	2	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0006	647	1	0	1	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0007	647	1	1	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0008	647	1	1	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0009	647	1	0	0	1	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0010	647	1	1	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	t0011	647	1	1	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP2_chr4_15955245_15968175	1/1	t0001	434	292	69	43	149	11	18	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	t0002	434	131	11	39	51	6	24	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	t0003	434	16	1	1	11	1	2	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	t0004	430	11	11	0	0	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	t0005	434	4	4	0	0	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	t0006	434	3	2	1	0	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	t0007	434	1	0	0	1	0	0	copy fasta	FGFBP2	chr4	15955245	15968175