JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGFBP3_chr10_91901584_91914486	0/0	t0001	1777	256	40	55	126	6	29	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0002	1777	43	17	13	1	5	7	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0003	1778	35	1	2	26	6	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0004	1777	20	0	1	19	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0005	1777	18	16	2	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0006	1778	11	4	4	2	0	1	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	1/0	t0007	1777	7	6	0	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/1	t0008	1777	6	0	2	0	1	2	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0009	1777	6	5	1	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0010	1778	4	4	0	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0011	1777	2	0	0	2	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0012	1777	2	2	0	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0013	1777	2	0	0	0	0	2	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0014	1777	1	1	0	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0015	1777	1	0	0	0	0	1	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0016	1778	1	0	0	1	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	t0017	1777	1	0	0	1	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFR1OP2_chr12_26933470_26971648	0/0	t0001	2171	128	26	12	72	5	13	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/1	t0002	2172	93	4	32	42	4	10	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0003	2171	59	5	1	47	1	5	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0004	2172	53	3	12	32	3	3	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0005	2173	37	7	9	9	4	8	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	1/0	t0006	2171	14	5	5	2	0	1	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0007	2171	9	9	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0008	2172	5	3	2	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0009	2171	4	4	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0010	2172	3	3	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0011	2172	3	0	2	1	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0012	2171	2	2	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0013	2173	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0014	2172	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0015	2171	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0016	2173	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0017	2171	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0018	2172	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0019	2171	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0020	2172	1	0	0	1	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0021	2172	1	0	1	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0022	2171	1	0	0	0	0	1	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0023	2172	1	0	0	1	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0024	2173	1	0	0	1	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0025	2172	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0026	2172	1	0	0	0	0	1	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0027	2171	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	t0028	2181	1	0	0	0	1	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1_chr8_38406143_38473635	1/0	t0001	3229	113	25	23	47	2	15	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/1	t0002	3229	87	9	14	42	5	16	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0003	3229	75	4	13	50	6	2	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0004	3229	19	3	7	8	0	1	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0005	3229	14	14	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635