JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGFR1_chr8_38406143_38473635	0/0	t0006	3229	3	0	3	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0007	3229	2	0	0	2	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0008	3229	2	2	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0009	3229	2	0	0	2	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0010	3229	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0011	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0012	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0013	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0014	3229	1	0	1	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0015	3229	1	0	0	0	0	1	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0016	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0017	3229	1	0	0	0	0	1	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0018	3229	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0019	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0020	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0021	3229	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0022	3229	1	0	1	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0023	3229	1	0	1	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0024	3229	1	0	0	0	1	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0025	3229	1	0	1	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0026	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0027	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	t0028	3229	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR2_chr10_121473332_121603444	0/0	t0001	2159	52	4	18	20	3	7	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0002	2159	49	7	7	28	1	6	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0003	2159	31	21	3	5	1	1	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	1/0	t0004	2159	28	25	0	0	0	2	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0005	2159	13	1	3	8	0	1	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0006	2159	12	2	0	10	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0007	2159	11	3	3	5	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0008	2159	7	2	4	0	1	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0009	2159	6	6	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0010	2159	5	4	1	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0011	2159	3	0	3	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0012	2159	3	3	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0013	2159	3	3	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/1	t0014	2159	2	0	1	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0015	2159	2	0	0	0	0	2	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0016	2159	2	2	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0017	2159	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0018	2159	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0019	2159	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0020	2159	1	0	0	1	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0021	2159	1	0	1	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0022	2159	1	0	0	0	0	1	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0023	2159	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0024	2159	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0025	2159	1	0	1	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0026	2159	1	0	1	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	t0027	2159	1	0	0	1	0	0	copy fasta	FGFR2	chr10	121473332	121603444