JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGFR3_chr4_1788293_1813867	0/1	t0001	1879	320	61	76	129	12	41	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0002	1879	12	8	1	3	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0003	1879	8	8	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	1/0	t0004	1881	6	5	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0005	1869	5	0	0	5	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0006	1881	3	3	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0007	1879	3	0	1	0	0	2	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0008	1879	2	0	1	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0009	1879	2	2	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0010	1881	2	0	0	2	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0011	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0012	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0013	1879	1	0	1	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0014	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0015	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0016	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0017	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0018	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0019	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0020	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0021	1879	1	0	0	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0022	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0023	1879	1	0	0	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0024	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0025	1881	1	1	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0026	1881	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	t0027	1879	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR4_chr5_177081915_177103144	1/1	t0001	685	305	70	59	130	12	32	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0002	685	28	18	5	3	0	2	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0003	685	25	2	10	0	4	9	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0004	670	4	0	1	0	0	3	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0005	685	4	3	1	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0006	715	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0007	685	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0008	685	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0009	685	1	0	0	0	0	1	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0010	685	1	0	0	0	0	1	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	t0011	685	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFRL1_chr4_1006626_1031898	1/0	t0001	1897	210	31	52	97	8	21	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0002	1897	39	5	9	13	3	9	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0003	2102	27	1	6	11	3	6	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0004	1897	18	0	1	17	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0005	1897	15	8	2	3	0	2	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0006	1870	11	10	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0007	2102	7	0	0	7	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0008	1898	7	7	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0009	1897	5	5	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0010	1902	4	3	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0011	1897	4	4	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0012	1897	4	0	0	3	0	1	copy fasta	FGFRL1	chr4	1006626	1031898