JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGFRL1_chr4_1006626_1031898	0/0	t0013	1895	4	4	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0014	1897	3	3	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0015	1897	3	0	0	3	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0016	1895	2	2	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0017	1885	2	2	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0018	1897	2	0	0	2	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0019	1897	2	2	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0020	1895	2	0	2	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0021	1897	2	0	1	0	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0022	1893	2	1	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0023	1897	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0024	1897	1	0	0	0	1	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0025	1896	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0026	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0027	1897	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0028	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0029	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0030	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0031	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0032	1897	1	0	0	0	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0033	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0034	1897	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0035	1897	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0036	2102	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0037	2102	1	0	0	0	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0038	2102	1	0	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0039	2101	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0040	1897	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0041	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0042	1898	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0043	1896	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0044	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0045	1897	1	0	0	0	1	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0046	1897	1	0	0	0	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0047	1897	1	0	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0048	1897	1	0	0	0	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0049	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0050	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0051	1897	1	0	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0052	1897	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0053	1897	1	0	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/1	t0054	1897	1	0	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0055	1895	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0056	1897	1	0	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0057	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0058	1897	1	0	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0059	1895	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0060	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	t0061	1897	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGGY_chr1_59292094_59767730	0/0	t0001	220	124	37	20	40	5	22	copy fasta	FGGY	chr1	59292094	59767730