Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKIRIN1_chr1_38986276_39011059	0/0	t0026	2110	1	0	1	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0027	2110	1	0	0	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0028	2110	1	0	0	0	1	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0029	2110	1	0	0	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0030	2114	1	0	0	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0031	2110	1	0	0	0	1	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0032	2110	1	0	0	0	1	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0033	2110	1	0	0	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0034	2110	1	0	0	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0035	2110	1	1	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	t0036	2111	1	1	0	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN2_chr6_87669860_87707233	1/0	t0001	1287	133	6	26	70	7	23	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0002	1288	101	10	26	51	4	10	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0003	1287	52	12	12	23	2	3	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/1	t0004	1287	29	8	4	13	0	3	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0005	1286	14	14	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0006	1289	7	7	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0007	1287	6	6	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0008	1288	6	3	0	1	0	2	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0009	1287	4	0	1	2	0	1	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0010	1287	4	3	1	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0011	1286	4	2	0	2	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0012	1288	4	0	1	1	1	1	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0013	1286	3	2	1	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0014	1288	3	0	0	3	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0015	1287	3	3	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0016	1287	2	2	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0017	1289	2	0	1	1	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0018	1287	2	2	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0019	1287	2	0	0	0	0	2	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0020	1287	2	0	0	2	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0021	1286	2	0	0	2	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0022	1287	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0023	1287	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0024	1286	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0025	1288	1	0	0	0	0	1	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0026	1288	1	0	0	0	1	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0027	1287	1	0	0	0	1	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0028	1289	1	0	0	1	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0029	1288	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0030	1287	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0031	1287	1	0	1	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0032	1287	1	0	0	1	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0033	1287	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0034	1287	1	0	1	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0035	1286	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0036	1287	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0037	1288	1	0	0	0	0	1	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0038	1287	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0039	1287	1	0	0	1	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233