JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGGY_chr1_59292094_59767730	1/1	t0002	218	24	13	8	0	1	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	t0003	220	15	12	1	2	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	t0004	218	2	1	1	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	t0005	207	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGG_chr4_154599171_154617656	0/1	t0001	711	155	40	14	82	5	13	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	t0002	711	151	29	28	69	9	16	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	1/0	t0003	711	104	13	18	47	4	21	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	t0004	711	10	8	2	0	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	t0005	711	3	3	0	0	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	t0006	711	2	0	0	2	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	t0007	711	1	1	0	0	0	0	copy fasta	FGG	chr4	154599171	154617656
FGL1_chr8_17859389_17900524	1/1	t0001	299	360	95	68	148	15	32	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	t0002	299	3	0	0	0	1	2	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	t0003	299	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	t0004	299	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	t0005	299	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL2_chr7_77188369_77204819	1/1	t0001	2937	310	38	66	163	10	31	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0002	2937	25	6	1	18	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0003	2938	18	0	5	6	3	4	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0004	2937	16	16	0	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0005	2937	9	8	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0006	2938	8	2	0	2	3	1	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0007	2937	6	5	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0008	2937	6	6	0	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0009	2937	6	5	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0010	2937	5	1	1	0	0	3	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0011	2937	4	3	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0012	2937	4	0	0	0	0	4	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0013	2937	3	0	0	3	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0014	2937	2	2	0	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0015	2938	1	0	0	0	0	1	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0016	2937	1	1	0	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0017	2937	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0018	2937	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0019	2937	1	0	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0020	2937	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0021	2937	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0022	2937	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0023	2938	1	1	0	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	t0024	2937	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGR_chr1_27607064_27640185	1/1	t0001	1048	266	83	62	77	13	29	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	t0002	1048	4	4	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	t0003	1048	2	2	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	t0004	1048	1	0	0	0	1	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	t0005	1048	1	0	0	0	0	1	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	t0006	1048	1	1	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	t0007	1048	1	0	0	1	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	t0008	1048	1	1	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	t0009	1048	1	1	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FHAD1_chr1_15242223_15403328	1/0	t0001	1103	41	1	12	16	3	8	copy fasta	FHAD1	chr1	15242223	15403328