JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FHAD1_chr1_15242223_15403328	0/0	t0002	1105	21	1	3	15	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0003	1102	21	4	5	11	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0004	1103	19	1	2	12	1	3	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0005	1103	17	0	3	10	0	4	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0006	1102	16	3	2	10	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0007	1103	16	14	2	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0008	1105	14	1	0	10	0	3	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0009	1103	13	1	2	8	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0010	1105	8	0	1	0	2	5	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/1	t0011	1102	8	2	3	0	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0012	1104	8	2	1	2	0	3	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0013	1104	7	2	4	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0014	1103	7	4	3	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0015	1104	6	1	3	1	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0016	1103	5	5	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0017	1103	4	0	2	1	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0018	1104	4	4	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0019	1104	4	4	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0020	1101	3	0	2	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0021	1103	3	3	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0022	1103	3	3	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0023	1103	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0024	1103	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0025	1103	2	0	0	0	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0026	1103	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0027	1104	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0028	1105	2	0	0	1	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0029	1104	2	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0030	1105	2	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0031	1103	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0032	1105	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0033	1103	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0034	1102	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0035	1103	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0036	1102	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0037	1104	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0038	1105	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0039	1103	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0040	1103	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0041	1103	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0042	1104	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0043	1103	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0044	1104	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0045	1102	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0046	1104	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0047	1103	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0048	1104	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0049	1103	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0050	1102	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0051	1103	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328