JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FHAD1_chr1_15242223_15403328	0/0	t0052	1104	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0053	1104	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0054	1103	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0055	1104	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0056	1102	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0057	1105	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0058	1102	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0059	1103	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	t0060	1105	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHDC1_chr4_152931323_152984671	0/0	t0001	3163	180	14	37	101	12	16	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/1	t0002	3165	98	2	22	55	0	18	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0003	3163	36	24	1	11	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0004	3165	16	3	4	7	1	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0005	3165	9	1	0	3	0	5	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	1/0	t0006	3166	8	7	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0007	3166	7	6	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0008	3163	5	5	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0009	3165	5	0	2	0	3	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0010	3163	4	0	0	4	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0011	3165	4	4	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0012	3163	3	1	2	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0013	3166	3	3	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0014	3163	3	0	0	3	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0015	3166	3	1	2	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0016	3166	3	3	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0017	3163	3	0	0	1	0	2	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0018	3163	2	2	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0019	3165	2	2	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0020	3163	2	2	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0021	3163	2	0	0	0	1	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0022	3165	2	2	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0023	3165	2	2	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0024	3164	2	2	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0025	3165	2	0	0	2	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0026	3163	2	0	0	2	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0027	3165	2	0	0	0	0	2	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0028	3163	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0029	3166	1	0	0	0	0	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0030	3166	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0031	3163	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0032	3162	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0033	3162	1	0	0	0	1	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0034	3162	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0035	3163	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0036	3163	1	0	0	0	0	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0037	3163	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0038	3163	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0039	3165	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0040	3166	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0041	3165	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671