JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FHDC1_chr4_152931323_152984671	0/0	t0042	3165	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0043	3165	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0044	3164	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0045	3165	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0046	3165	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0047	3163	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0048	3163	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0049	3163	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0050	3166	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0051	3166	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0052	3165	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0053	3165	1	0	0	0	0	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0054	3150	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	t0055	3165	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHIP1A_chr4_151404176_151675503	0/0	t0001	8396	48	0	11	35	0	2	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0002	8396	43	2	12	25	1	3	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0003	8370	21	4	1	16	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0004	8396	16	12	1	0	1	2	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0005	8396	11	0	0	11	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0006	8396	9	0	2	3	0	4	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0007	8396	6	6	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0008	8370	5	5	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0009	8395	5	5	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0010	8396	5	5	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0011	8396	4	0	2	0	0	2	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0012	8397	3	0	0	3	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0013	8396	3	0	0	0	0	3	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0014	8393	3	0	3	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0015	8396	3	3	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0016	8396	3	3	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0017	8396	3	3	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	1/0	t0018	8395	3	0	2	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0019	8396	3	0	3	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0020	8396	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0021	8370	2	0	1	0	1	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0022	8395	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0023	8370	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0024	8396	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0025	8396	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0026	8396	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0027	8396	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0028	8395	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0029	8396	2	2	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0030	8396	2	0	2	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0031	8396	2	0	2	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0032	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0033	8369	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0034	8369	1	0	0	0	1	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0035	8370	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0036	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503