JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FHIP1A_chr4_151404176_151675503	0/0	t0037	8396	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0038	8395	1	0	1	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/1	t0039	8395	1	0	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0040	8395	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0041	8370	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0042	8396	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0043	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0044	8396	1	0	0	0	0	1	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0045	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0046	8396	1	0	0	0	1	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0047	8396	1	0	1	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0048	8396	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0049	8395	1	0	1	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0050	8396	1	0	0	0	0	1	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0051	8395	1	0	0	0	1	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0052	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0053	8396	1	0	0	0	0	1	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0054	8396	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0055	8435	1	0	0	0	0	1	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0056	8396	1	0	1	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0057	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0058	8396	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0059	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0060	8396	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0061	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	t0062	8396	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1B_chr11_6206345_6239636	1/1	t0001	446	355	65	70	162	16	40	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	t0002	446	18	17	1	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	t0003	446	12	3	2	7	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	t0004	446	2	0	0	0	0	2	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	t0005	446	1	0	1	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	t0006	446	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	t0007	446	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP2A_chr10_114816780_114869717	1/0	t0001	3477	170	50	31	63	8	17	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0002	3477	65	5	10	47	0	3	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/1	t0003	3478	38	6	13	4	4	10	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0004	3478	11	6	4	0	0	1	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0005	3477	10	0	0	10	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0006	3477	5	5	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0007	3477	4	3	1	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0008	3478	4	4	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0009	3470	3	0	2	0	1	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0010	3477	3	3	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0011	3477	2	2	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0012	3478	2	0	1	0	1	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0013	3477	2	2	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0014	3477	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0015	3478	1	0	1	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0016	3477	1	0	1	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0017	3477	1	0	1	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717