JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FHIP2A_chr10_114816780_114869717	0/0	t0018	3477	1	0	0	1	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0019	3478	1	0	1	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0020	3478	1	0	0	0	0	1	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0021	3478	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0022	3477	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0023	3477	1	0	0	1	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0024	3477	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0025	3478	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	t0026	3478	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2B_chr8_22084150_22109911	0/1	t0001	2085	168	52	26	62	10	17	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0002	2087	144	20	46	55	5	18	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0003	2088	14	0	0	12	0	2	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0004	2086	11	1	1	7	0	2	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0005	2084	9	2	3	2	2	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	1/0	t0006	2085	8	7	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0007	2086	4	1	1	2	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0008	2105	3	0	0	3	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0009	2085	2	0	0	2	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0010	2087	2	0	1	0	1	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0011	2085	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0012	2087	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0013	2085	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0014	2105	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0015	2085	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0016	2085	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0017	2085	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0018	2087	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0019	2086	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0020	2086	1	0	0	0	0	1	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0021	2085	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0022	2414	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0023	2087	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0024	2112	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0025	2111	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0026	2085	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0027	2087	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0028	2085	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0029	2111	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0030	2106	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0031	2085	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0032	2102	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0033	2087	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0034	2103	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0035	2102	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0036	2085	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0037	2085	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0038	2085	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	t0039	2087	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIT_chr3_59742277_61256452	0/0	t0001	2674	15	8	5	0	0	2	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0002	2674	8	5	3	0	0	0	copy fasta	FHIT	chr3	59742277	61256452