JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FHIT_chr3_59742277_61256452	0/0	t0003	2674	4	3	0	0	0	1	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0004	2673	4	0	4	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0005	2675	3	2	1	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0006	2674	2	1	0	0	0	1	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0007	2674	2	1	1	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0008	2674	1	1	0	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0009	2674	1	0	1	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0010	2674	1	1	0	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0011	2674	1	1	0	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0012	2674	1	1	0	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0013	2674	1	1	0	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0014	2673	1	1	0	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	t0015	2674	1	0	1	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHL1_chrX_136142533_136216354	0/1	t0001	1597	104	14	13	66	3	7	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	1/0	t0002	1597	90	24	17	29	4	15	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0003	1597	5	5	0	0	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0004	1597	2	2	0	0	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0005	1606	1	1	0	0	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0006	1598	1	0	0	1	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0007	1598	1	0	0	1	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0008	1597	1	0	1	0	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0009	1597	1	0	1	0	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0010	1597	1	0	0	1	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0011	1597	1	0	0	0	0	1	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0012	1597	1	1	0	0	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0013	1597	1	0	0	1	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0014	1597	1	0	0	0	0	1	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	t0015	1597	1	1	0	0	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136192047_136216354	0/1	t0001	1396	139	16	19	88	5	10	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	1/0	t0002	1396	138	37	24	51	8	17	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0003	1396	6	6	0	0	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0004	1396	2	0	0	2	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0005	1396	2	0	0	2	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0006	1396	1	0	0	1	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0007	1396	1	0	0	0	0	1	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0008	1396	1	0	0	0	0	1	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0009	1396	1	1	0	0	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0010	1396	1	0	0	0	0	1	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0011	1397	1	0	0	1	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0012	1396	1	1	0	0	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0013	1396	1	0	1	0	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	t0014	1396	1	1	0	0	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL2_chr2_105355826_105404051	1/1	t0001	743	346	82	43	174	12	33	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	t0002	743	59	0	16	28	4	11	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	t0003	743	32	8	9	13	0	2	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	t0004	743	4	4	0	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	t0005	743	2	0	0	2	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	t0006	743	2	0	0	2	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	t0007	743	1	1	0	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	t0008	743	1	1	0	0	0	0	copy fasta	FHL2	chr2	105355826	105404051