JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FHL2_chr2_105355826_105404051	0/0	t0009	743	1	0	0	1	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL3_chr1_37991770_38010514	0/1	t0001	814	422	77	81	205	16	42	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	1/0	t0002	814	21	16	1	0	0	3	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0003	799	5	5	0	0	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0004	814	2	0	0	0	0	2	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0005	814	1	0	0	1	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0006	799	1	1	0	0	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0007	814	1	0	0	1	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0008	814	1	0	0	1	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0009	824	1	0	0	1	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0010	814	1	0	0	1	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0011	814	1	0	0	0	0	1	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	t0012	799	1	1	0	0	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL5_chr6_96558128_96623626	1/0	t0001	3095	136	23	26	65	5	16	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/1	t0002	3093	82	6	6	60	0	9	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0003	3093	55	9	13	20	5	8	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0004	3093	55	33	2	14	0	6	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0005	3093	9	0	5	2	0	2	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0006	3095	7	0	7	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0007	3093	6	1	3	0	2	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0008	3095	5	0	2	0	1	2	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0009	3093	5	4	1	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0010	3095	3	3	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0011	3095	3	0	2	0	1	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0012	3093	2	2	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0013	3093	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0014	3095	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0015	3095	1	0	0	0	0	1	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0016	3093	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0017	3095	1	0	0	1	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0018	3095	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0019	3093	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0020	3093	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0021	3093	1	0	1	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	t0022	3093	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHOD1_chr16_67224389_67252481	1/1	t0001	319	206	79	47	42	8	28	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	t0002	317	3	2	1	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	t0003	319	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD3_chr18_36292713_36785220	0/1	t0001	814	137	61	27	33	4	11	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	t0002	814	18	8	2	7	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	1/0	t0003	814	10	3	3	1	0	2	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	t0004	814	2	0	0	0	0	2	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	t0005	814	1	0	0	1	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FH_chr1_241492603_241524755	1/1	t0001	259	401	91	63	195	12	38	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	t0002	257	4	3	1	0	0	0	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	t0003	259	1	0	0	1	0	0	copy fasta	FH	chr1	241492603	241524755
FIBCD1_chr9_130897440_130944247	0/0	t0001	2264	101	9	23	60	3	6	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	1/0	t0002	2265	89	12	13	37	7	19	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0003	2265	41	10	2	24	0	5	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0004	2265	27	17	7	0	0	3	copy fasta	FIBCD1	chr9	130897440	130944247