JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FIBCD1_chr9_130897440_130944247	0/0	t0005	2265	26	1	13	2	2	8	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/1	t0006	2265	17	6	7	0	3	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0007	2265	12	9	3	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0008	2265	9	8	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0009	2264	6	0	0	6	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0010	2265	6	6	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0011	2265	4	0	0	4	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0012	2264	4	0	3	0	1	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0013	2264	4	0	0	4	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0014	2265	3	3	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0015	2265	3	0	0	3	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0016	2265	3	3	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0017	2264	2	0	0	2	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0018	2264	2	2	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0019	2264	2	2	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0020	2265	2	0	0	2	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0021	2265	2	2	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0022	2265	1	0	0	1	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0023	2264	1	0	0	1	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0024	2265	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0025	2265	1	0	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0026	2264	1	0	0	1	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0027	2265	1	0	0	0	0	1	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0028	2264	1	0	0	1	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0029	2264	1	0	0	1	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0030	2265	1	0	0	1	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0031	2265	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0032	2265	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0033	2265	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0034	2265	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0035	2265	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0036	2265	1	0	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0037	2265	1	0	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	t0038	2265	1	0	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBIN_chr11_26989112_27002087	1/1	t0001	2341	276	24	64	144	14	28	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0002	2341	43	12	3	27	0	1	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0003	2341	28	8	5	7	2	6	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0004	2341	23	23	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0005	2341	17	4	0	12	0	1	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0006	2341	8	1	6	0	0	1	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0007	2341	6	0	0	6	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0008	2340	6	6	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0009	2341	5	5	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0010	2341	4	3	1	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0011	2341	4	1	0	3	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0012	2341	4	0	1	0	0	3	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0013	2341	4	4	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0014	2341	3	2	1	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0015	2341	2	0	0	0	0	2	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0016	2341	2	0	0	2	0	0	copy fasta	FIBIN	chr11	26989112	27002087