JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FIBIN_chr11_26989112_27002087	0/0	t0017	2341	2	0	0	2	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0018	2341	2	0	0	0	0	2	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0019	2341	2	1	1	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0020	2341	1	1	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0021	2341	1	1	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0022	2341	1	1	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0023	2341	1	0	0	1	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0024	2341	1	1	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0025	2341	1	0	0	1	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0026	2341	1	0	0	1	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0027	2341	1	1	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0028	2341	1	0	0	1	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0029	2341	1	1	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	t0030	2341	1	0	0	1	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBP_chr11_65878740_65893471	1/1	t0001	288	387	92	70	175	12	36	copy fasta	FIBP	chr11	65878740	65893471
FIBP_chr11_65878740_65893471	0/0	t0002	288	1	0	0	1	0	0	copy fasta	FIBP	chr11	65878740	65893471
FICD_chr12_108510277_108526210	0/0	t0001	1879	116	14	26	61	9	6	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0002	1881	83	1	9	60	0	13	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	1/0	t0003	1879	36	13	7	11	2	2	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0004	1879	33	0	3	24	1	5	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/1	t0005	1882	27	0	2	22	0	2	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0006	1878	26	16	5	0	1	4	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0007	1880	16	5	6	3	2	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0008	1881	16	7	1	2	1	5	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0009	1879	12	3	3	3	0	3	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0010	1881	10	9	1	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0011	1880	7	0	2	5	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0012	1880	5	0	0	5	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0013	1882	5	5	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0014	1880	5	0	0	5	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0015	1880	4	0	0	4	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0016	1882	4	4	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0017	1878	3	2	1	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0018	1878	3	0	1	0	0	2	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0019	1884	3	3	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0020	1880	3	0	2	0	0	1	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0021	1880	3	3	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0022	1881	3	0	0	3	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0023	1883	2	2	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0024	1881	2	0	0	2	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0025	1882	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0026	1880	1	0	0	0	0	1	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0027	1879	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0028	1880	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0029	1879	1	0	0	0	0	1	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0030	1880	1	0	0	0	0	1	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0031	1879	1	0	1	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0032	1881	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0033	1882	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0034	1884	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210