Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCD4_chr14_74280269_74307934	0/0	t0013	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0014	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0015	1215	1	0	1	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0016	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0017	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0018	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0019	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0020	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0021	1215	1	0	0	0	0	1	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0022	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0023	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0024	1215	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCE1_chr4_145093311_145134524	1/1	t0001	2088	243	75	54	76	10	26	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	t0002	2088	4	3	1	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	t0003	2088	4	4	0	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	t0004	2088	2	2	0	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	t0005	2088	2	2	0	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	t0006	2088	2	1	1	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	t0007	2088	1	0	0	1	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	t0008	2088	1	0	0	1	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	t0009	2088	1	1	0	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCF1_chr6_30566442_30596522	0/1	t0001	868	388	82	75	168	14	48	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	t0002	868	22	7	2	13	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	t0003	868	2	0	0	2	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	t0004	868	1	0	0	1	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	t0005	868	1	0	1	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	0/0	t0006	868	1	1	0	0	0	0	copy fasta	ABCF1	chr6	30566442	30596522
ABCF2_chr7_151206484_151232205	0/0	t0001	2656	130	13	25	78	2	12	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0002	2656	82	18	14	29	3	18	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0003	2656	40	2	9	27	1	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/1	t0004	2656	18	1	7	0	5	4	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0005	2656	14	1	6	6	1	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0006	2656	13	13	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0007	2657	7	7	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0008	2656	7	6	1	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0009	2656	7	5	2	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0010	2656	6	5	1	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0011	2656	4	3	1	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0012	2656	4	4	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0013	2656	4	4	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0014	2656	3	0	3	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0015	2656	3	0	0	3	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0016	2656	3	0	2	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0017	2656	2	2	0	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0018	2656	2	0	0	0	0	2	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0019	2656	2	0	2	0	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0020	2656	2	0	0	2	0	0	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0021	2656	2	0	1	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0022	2656	2	1	0	0	0	1	copy fasta	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	t0023	2656	2	0	0	1	0	1	copy fasta	ABCF2	chr7	151206484	151232205