JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FICD_chr12_108510277_108526210	0/0	t0035	1879	1	0	0	1	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0036	1881	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0037	1881	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0038	1881	1	0	0	0	0	1	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0039	1882	1	0	0	1	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0040	1883	1	0	0	1	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0041	1882	1	0	0	1	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0042	1881	1	0	0	0	0	1	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	t0043	1881	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FIG4_chr6_109686296_109830426	0/0	t0001	302	179	9	40	98	7	25	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	1/1	t0002	302	129	49	26	38	3	11	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	t0003	302	32	6	0	26	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	t0004	302	26	22	2	0	0	2	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	t0005	302	3	3	0	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	t0006	302	1	1	0	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIGLA_chr2_70772310_70795643	1/1	t0001	63	259	89	49	78	13	28	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	0/0	t0002	63	177	1	23	128	5	20	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	0/0	t0003	63	2	2	0	0	0	0	copy fasta	FIGLA	chr2	70772310	70795643
FIGNL1_chr7_50439133_50455350	0/1	t0001	1906	176	28	47	63	10	27	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	1/0	t0002	1906	104	20	6	68	4	5	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0003	1906	39	3	0	32	1	3	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0004	1906	28	16	6	0	3	3	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0005	1906	20	0	8	11	0	1	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0006	1906	14	0	0	13	0	1	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0007	1906	12	0	0	12	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0008	1901	7	5	2	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0009	1906	6	6	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0010	1906	5	5	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0011	1906	3	3	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0012	1906	2	2	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0013	1906	1	1	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0014	1906	1	0	0	1	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0015	1906	1	0	0	1	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0016	1906	1	0	1	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0017	1906	1	0	0	0	0	1	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0018	1906	1	0	0	1	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0019	1906	1	0	0	0	0	1	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	t0020	1906	1	1	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL2_chr12_51812899_51853718	0/0	t0001	2744	135	17	11	85	2	20	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/1	t0002	2744	117	7	25	70	9	5	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0003	2744	56	18	15	15	4	4	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	1/0	t0004	2744	43	12	10	2	1	17	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0005	2744	8	8	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0006	2744	6	5	1	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0007	2744	5	5	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0008	2744	5	5	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0009	2744	4	0	0	4	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0010	2744	3	3	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0011	2744	3	0	2	0	0	1	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0012	2744	2	0	0	0	2	0	copy fasta	FIGNL2	chr12	51812899	51853718