JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FIGNL2_chr12_51812899_51853718	0/0	t0013	2744	2	2	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0014	2744	2	2	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0015	2744	2	0	2	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0016	2744	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0017	2744	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0018	2744	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0019	2744	1	0	0	0	0	1	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0020	2744	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0021	2744	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0022	2744	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0023	2744	1	0	1	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0024	2744	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0025	2744	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0026	2744	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0027	2744	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0028	2744	1	0	1	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0029	2744	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	t0030	2744	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGN_chr2_163597611_163741008	0/1	t0001	7264	54	9	12	18	5	9	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0002	7266	29	0	0	27	0	2	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	1/0	t0003	7258	14	13	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0004	7265	10	4	0	6	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0005	7264	10	4	0	4	0	2	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0006	7265	10	3	5	2	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0007	7255	7	7	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0008	7259	6	0	0	6	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0009	7263	5	2	0	3	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0010	7267	5	0	0	5	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0011	7265	5	4	1	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0012	7265	4	0	0	0	0	4	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0013	7267	3	3	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0014	7266	3	0	0	1	0	2	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0015	7262	3	3	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0016	7264	3	2	1	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0017	7264	3	0	0	3	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0018	7265	3	0	0	3	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0019	7264	3	0	3	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0020	7264	3	0	0	1	0	2	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0021	7267	2	2	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0022	7265	2	0	1	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0023	7264	2	0	2	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0024	7262	2	2	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0025	7264	2	2	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0026	7264	2	2	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0027	7265	2	1	0	0	0	1	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0028	7256	2	1	1	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0029	7266	2	0	0	2	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0030	7263	2	2	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0031	7264	2	2	0	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0032	7265	2	0	0	2	0	0	copy fasta	FIGN	chr2	163597611	163741008