JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FIGN_chr2_163597611_163741008	0/0	t0083	7260	1	0	1	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0084	7267	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0085	7265	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	t0086	7264	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FILIP1L_chr3_99823811_100119501	0/1	t0001	2062	78	7	20	31	6	13	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	1/0	t0002	2063	76	5	21	28	5	16	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0003	2063	39	16	7	12	0	4	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0004	2062	17	17	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0005	2062	14	1	1	5	1	6	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0006	2085	5	5	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0007	2062	5	4	1	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0008	2063	4	4	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0009	2058	3	3	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0010	2062	2	0	2	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0011	2063	2	2	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0012	2063	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0013	2058	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0014	2058	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0015	2063	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0016	2062	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0017	2063	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0018	2062	1	0	0	1	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0019	2084	1	0	0	1	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0020	2063	1	0	0	0	0	1	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0021	2062	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0022	2063	1	0	0	1	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0023	2062	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	t0024	2062	1	0	0	1	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1_chr6_75303090_75498800	1/1	t0001	995	286	63	44	138	10	29	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	t0002	995	7	7	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	t0003	995	5	5	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	t0004	995	4	4	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	t0005	995	1	1	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	t0006	995	1	0	0	0	0	1	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	t0007	995	1	0	0	1	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	t0008	995	1	0	0	1	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FIP1L1_chr4_53372641_53465862	0/0	t0001	1608	107	11	28	51	7	10	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0002	1612	77	26	2	33	0	16	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	1/1	t0003	1612	68	7	11	38	1	9	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0004	1608	60	10	15	28	4	3	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0005	1608	46	8	6	24	2	6	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0006	1608	15	13	2	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0007	1612	4	0	0	2	0	2	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0008	1608	3	3	0	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0009	1608	2	2	0	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0010	1612	1	1	0	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0011	1612	1	1	0	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0012	1608	1	1	0	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0013	1608	1	1	0	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0014	1608	1	0	0	1	0	0	copy fasta	FIP1L1	chr4	53372641	53465862