JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FIP1L1_chr4_53372641_53465862	0/0	t0015	1608	1	1	0	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0016	1608	1	1	0	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0017	1612	1	0	0	1	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0018	1608	1	0	1	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIP1L1_chr4_53372641_53465862	0/0	t0019	1612	1	0	1	0	0	0	copy fasta	FIP1L1	chr4	53372641	53465862
FIRRM_chr1_169790040_169859080	0/1	t0001	1451	143	26	29	59	6	22	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0002	1451	106	19	13	67	3	4	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0003	1451	60	17	14	16	4	9	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0004	1460	58	3	2	48	1	4	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0005	1456	15	0	5	5	2	3	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0006	1456	9	9	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0007	1460	5	5	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0008	1451	5	5	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0009	1436	4	4	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0010	1460	4	4	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	1/0	t0011	1450	1	0	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0012	1451	1	0	0	1	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0013	1451	1	1	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0014	1451	1	0	0	1	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0015	1451	1	1	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0016	1451	1	0	0	1	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0017	1451	1	0	0	1	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0018	1451	1	0	1	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0019	1451	1	0	1	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0020	1451	1	0	1	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	t0021	1451	1	0	0	1	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIS1_chr7_101234472_101250081	1/1	t0001	412	397	87	59	192	14	43	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	t0002	423	17	10	1	0	4	2	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	t0003	412	1	0	0	0	0	1	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	t0004	412	1	1	0	0	0	0	copy fasta	FIS1	chr7	101234472	101250081
FITM1_chr14_24125659_24137847	0/1	t0001	930	205	38	40	95	9	22	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	1/0	t0002	930	140	22	27	70	7	13	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0003	930	41	33	5	0	0	3	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0004	930	3	0	3	0	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0005	930	1	0	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0006	930	1	0	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0007	930	1	0	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0008	930	1	0	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0009	930	1	0	1	0	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0010	930	1	0	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	t0011	930	1	1	0	0	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM2_chr20_44297840_44316202	0/1	t0001	3840	131	37	23	49	6	15	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0002	3840	88	11	14	53	2	8	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0003	3840	78	15	14	35	4	10	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0004	3840	26	0	8	7	1	10	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0005	3840	20	0	0	20	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	1/0	t0006	3840	16	2	8	0	4	1	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0007	3840	8	1	0	7	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0008	3839	7	0	0	7	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0009	3840	5	5	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202