JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FITM2_chr20_44297840_44316202	0/0	t0010	3840	5	0	0	5	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0011	3840	4	4	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0012	3840	4	4	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0013	3840	3	3	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0014	3840	3	3	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0015	3834	3	3	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0016	3840	2	0	0	2	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0017	3840	2	0	0	0	0	2	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0018	3840	2	0	0	2	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0019	3840	2	0	0	2	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0020	3840	1	0	0	1	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0021	3834	1	1	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0022	3840	1	0	1	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0023	3857	1	0	0	1	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0024	3840	1	1	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0025	3840	1	0	0	1	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0026	3840	1	0	0	1	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0027	3840	1	0	0	0	1	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0028	3840	1	1	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0029	3840	1	0	0	1	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0030	3840	1	0	0	1	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0031	3840	1	1	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0032	3818	1	0	0	1	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0033	3840	1	1	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	t0034	3840	1	1	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FIZ1_chr19_55586376_55604517	1/0	t0001	1155	389	70	81	181	14	42	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0002	1153	13	13	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0003	1154	5	5	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0004	1155	4	3	1	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0005	1155	4	0	0	4	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0006	1155	3	3	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0007	1155	2	2	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0008	1155	2	0	1	0	0	1	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0009	1155	1	1	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0010	1155	1	1	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/1	t0011	1155	1	0	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0012	1155	1	0	1	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0013	1155	1	0	0	0	0	1	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0014	1155	1	1	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0015	1155	1	0	0	0	0	1	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0016	1155	1	1	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0017	1155	1	0	0	1	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	t0018	1155	1	0	0	0	0	1	copy fasta	FIZ1	chr19	55586376	55604517
FJX1_chr11_35613460_35625865	1/1	t0001	1093	280	19	66	151	9	33	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0002	1090	96	49	15	21	5	6	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0003	1091	52	0	2	50	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0004	1086	17	17	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0005	1086	6	6	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0006	1092	4	0	2	0	0	2	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0007	1086	2	2	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865