JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FJX1_chr11_35613460_35625865	0/0	t0008	1092	1	0	1	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0009	1091	1	1	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0010	1090	1	1	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0011	1090	1	1	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	t0012	1090	1	0	0	0	0	1	copy fasta	FJX1	chr11	35613460	35625865
FKBP10_chr17_41808004_41828213	0/1	t0001	834	304	67	61	133	11	31	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	1/0	t0002	837	80	20	14	31	3	11	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	t0003	837	3	0	3	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	t0004	834	1	0	0	1	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	t0005	834	1	0	0	1	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	t0006	837	1	1	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	t0007	834	1	0	1	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	t0008	834	1	0	1	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP11_chr12_48916963_48930492	1/1	t0001	86	256	86	42	82	13	31	copy fasta	FKBP11	chr12	48916963	48930492
FKBP11_chr12_48916963_48930492	0/0	t0002	86	126	8	36	68	3	11	copy fasta	FKBP11	chr12	48916963	48930492
FKBP14_chr7_30005587_30031702	1/1	t0001	4343	158	31	30	66	10	19	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0002	4340	47	16	11	13	3	4	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0003	4341	20	3	2	14	0	1	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0004	4326	13	1	3	9	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0005	4343	8	1	0	3	1	3	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0006	4343	6	2	0	4	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0007	4343	6	2	0	4	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0008	4339	6	0	0	6	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0009	4343	5	4	1	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0010	4343	5	0	4	0	1	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0011	4343	4	1	2	0	1	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0012	4343	3	3	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0013	4343	3	3	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0014	4343	3	0	0	3	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0015	4343	3	2	1	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0016	4343	3	0	0	0	0	3	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0017	4343	2	2	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0018	4343	2	0	0	1	0	1	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0019	4343	2	0	2	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0020	4379	2	1	1	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0021	4281	2	2	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0022	4343	2	1	1	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0023	4345	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0024	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0025	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0026	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0027	4343	1	0	0	0	0	1	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0028	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0029	4345	1	0	0	1	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0030	4343	1	0	0	0	0	1	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0031	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0032	4345	1	0	1	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0033	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0034	4302	1	0	0	1	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0035	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702