JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FKBP14_chr7_30005587_30031702	0/0	t0036	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0037	4343	1	0	0	0	0	1	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0038	4343	1	0	0	1	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0039	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0040	4340	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0041	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0042	4340	1	0	1	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	t0043	4343	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP15_chr9_113156006_113226277	0/0	t0001	5100	73	8	18	34	5	8	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	1/0	t0002	5107	42	9	8	21	1	2	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0003	5110	41	1	6	29	2	3	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0004	5106	38	0	0	38	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0005	5106	29	1	4	18	1	5	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0006	5110	28	10	8	9	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0007	5112	23	0	2	14	1	6	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0008	5106	20	1	5	13	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/1	t0009	5107	14	8	3	0	2	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0010	5106	12	4	1	6	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0011	5107	10	0	1	9	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0012	5100	10	6	4	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0013	5106	7	7	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0014	5112	7	0	0	6	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0015	5101	6	5	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0016	5110	4	4	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0017	5113	3	0	3	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0018	5106	3	3	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0019	5107	2	0	0	0	0	2	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0020	5106	2	2	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0021	5108	2	2	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0022	5100	2	0	0	0	0	2	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0023	5101	2	1	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0024	5108	2	2	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0025	5100	2	1	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0026	5107	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0027	5107	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0028	5106	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0029	5106	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0030	5105	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0031	5106	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0032	5110	1	0	0	0	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0033	5108	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0034	5108	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0035	5108	1	0	0	0	1	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0036	5110	1	0	0	0	1	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0037	5110	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0038	5110	1	0	0	0	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0039	5110	1	0	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0040	5111	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0041	5110	1	0	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0042	5110	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277