JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FKBP15_chr9_113156006_113226277	0/0	t0043	5106	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0044	5107	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0045	5100	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0046	5107	1	0	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0047	5105	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0048	5105	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0049	5108	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0050	5110	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	t0051	5100	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP1A_chr20_1363978_1398054	0/0	t0001	1188	116	2	15	89	0	10	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	1/0	t0002	1188	51	1	4	33	0	12	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0003	1187	25	5	9	7	3	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/1	t0004	1187	20	1	5	9	3	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0005	1187	17	4	4	7	1	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0006	1188	16	4	3	4	2	3	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0007	1188	15	1	2	7	1	4	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0008	1187	13	10	3	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0009	1188	12	4	1	2	1	4	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0010	1187	9	6	0	1	1	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0011	1188	8	0	0	7	0	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0012	1188	7	0	5	0	1	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0013	1188	6	4	2	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0014	1187	6	0	2	0	0	4	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0015	1188	6	6	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0016	1187	5	5	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0017	1188	5	0	1	1	0	3	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0018	1188	5	4	0	0	0	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0019	1188	4	2	0	0	2	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0020	1187	4	4	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0021	1188	3	3	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0022	1187	3	1	0	1	0	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0023	1188	3	2	1	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0024	1188	2	0	0	0	1	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0025	1188	2	0	2	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0026	1188	2	0	0	2	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0027	1188	2	0	1	0	0	1	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0028	1187	2	2	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0029	1187	2	2	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0030	1188	2	2	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0031	1189	1	0	0	1	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0032	1187	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0033	1188	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0034	1188	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0035	1187	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0036	1188	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0037	1188	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0038	1187	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0039	1188	1	0	1	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0040	1188	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0041	1188	1	0	1	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054