JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FKBP1A_chr20_1363978_1398054	0/0	t0042	1187	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0043	1188	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0044	1187	1	1	0	0	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1A_chr20_1363978_1398054	0/0	t0045	1188	1	0	0	1	0	0	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1B_chr2_24044741_24068681	1/0	t0001	599	199	38	38	92	11	19	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP1B_chr2_24044741_24068681	0/0	t0002	599	45	30	5	6	1	3	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP1B_chr2_24044741_24068681	0/1	t0003	599	32	9	6	7	2	7	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP1B_chr2_24044741_24068681	0/0	t0004	599	23	1	6	4	3	9	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP1B_chr2_24044741_24068681	0/0	t0005	599	6	4	2	0	0	0	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP1B_chr2_24044741_24068681	0/0	t0006	599	3	2	1	0	0	0	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP1B_chr2_24044741_24068681	0/0	t0007	599	1	0	0	1	0	0	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP1B_chr2_24044741_24068681	0/0	t0008	599	1	0	0	0	1	0	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP2_chr11_64236095_64249132	1/1	t0001	146	274	93	59	84	6	30	copy fasta	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	0/0	t0002	146	39	0	10	29	0	0	copy fasta	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	0/0	t0003	147	17	1	5	7	0	4	copy fasta	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	0/0	t0004	146	2	0	2	0	0	0	copy fasta	FKBP2	chr11	64236095	64249132
FKBP3_chr14_45110599_45139481	1/1	t0001	625	299	86	40	124	17	30	copy fasta	FKBP3	chr14	45110599	45139481
FKBP3_chr14_45110599_45139481	0/0	t0002	623	4	0	0	4	0	0	copy fasta	FKBP3	chr14	45110599	45139481
FKBP3_chr14_45110599_45139481	0/0	t0003	625	1	0	0	0	1	0	copy fasta	FKBP3	chr14	45110599	45139481
FKBP4_chr12_2789970_2810423	0/1	t0001	2337	203	49	26	100	4	23	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	1/0	t0002	2336	136	22	33	60	5	15	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0003	2337	9	0	0	9	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0004	2337	6	6	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0005	2337	5	4	1	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0006	2337	4	3	1	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0007	2337	4	4	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0008	2337	3	0	0	3	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0009	2336	3	0	0	3	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0010	2336	2	0	1	0	1	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0011	2337	2	2	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0012	2337	1	1	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0013	2336	1	0	0	1	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0014	2336	1	0	0	1	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0015	2336	1	0	1	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0016	2336	1	0	0	1	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0017	2337	1	1	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0018	2337	1	1	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0019	2337	1	0	1	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	t0020	2337	1	1	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP5_chr6_35568590_35693915	0/1	t0001	2377	171	33	29	77	7	24	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	1/0	t0002	2377	64	14	10	24	5	10	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0003	2375	18	17	1	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0004	2377	10	2	4	0	2	2	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0005	2377	9	0	2	7	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0006	2377	6	0	0	6	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0007	2377	4	1	0	3	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0008	2381	4	0	0	4	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0009	2377	2	0	0	2	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0010	2377	1	0	0	0	0	1	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0011	2377	1	0	1	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915