Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKNA_chr9_114329156_114392982	0/0	t0035	3132	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0036	3133	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0037	3133	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0038	3133	1	0	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0039	3133	1	0	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0040	3133	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0041	3133	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0042	3133	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0043	3133	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0044	3130	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0045	3130	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0046	3134	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0047	3134	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0048	3134	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0049	3134	1	0	0	0	1	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0050	3134	1	0	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0051	3135	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0052	3135	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0053	3135	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0054	3135	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0055	3134	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0056	3135	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0057	3136	1	0	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0058	3135	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0059	3134	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0060	3130	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0061	3135	1	0	0	0	1	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0062	3134	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0063	3133	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0064	3133	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0065	3134	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0066	3134	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0067	3130	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0068	3130	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0069	3135	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKR1A1_chr1_45545826_45575049	1/1	t0001	430	173	39	45	63	7	17	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	t0002	430	168	35	27	80	5	21	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	t0003	430	9	8	1	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	t0004	430	1	0	0	1	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	t0005	430	1	0	1	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1B10_chr7_134522567_134546412	1/0	t0001	669	322	56	56	174	9	26	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/1	t0002	669	109	26	24	36	3	19	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	t0003	669	7	6	1	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	t0004	669	2	2	0	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	t0005	669	2	2	0	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	t0006	669	2	0	0	0	0	2	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	t0007	669	1	1	0	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	t0008	669	1	0	0	0	0	1	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	t0009	669	1	1	0	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	t0010	669	1	0	1	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412