JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FKBP5_chr6_35568590_35693915	0/0	t0012	2377	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0013	2377	1	0	0	1	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0014	2377	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0015	2377	1	0	0	0	0	1	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0016	2377	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0017	2377	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0018	2377	1	0	1	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0019	2375	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0020	2375	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0021	2377	1	0	1	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0022	2377	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	t0023	2377	1	0	1	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP6_chr7_73323161_73363625	1/1	t0001	716	308	81	58	125	10	32	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	t0002	716	5	0	0	5	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	t0003	716	3	0	1	2	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	t0004	716	1	0	0	1	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	t0005	716	1	0	0	1	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	t0006	716	1	0	1	0	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	t0007	716	1	1	0	0	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP7_chr2_178458664_178483600	1/1	t0001	2208	180	41	40	70	10	17	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0002	2207	158	30	20	94	2	12	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0003	2206	32	0	1	29	0	2	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0004	2207	5	5	0	0	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0005	2207	4	4	0	0	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0006	2203	4	4	0	0	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0007	2202	4	4	0	0	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0008	2207	2	0	0	0	0	2	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0009	2208	1	0	0	1	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0010	2208	1	0	0	0	0	1	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0011	2208	1	0	1	0	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0012	2208	1	0	0	0	0	1	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0013	2208	1	0	1	0	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0014	2208	1	0	0	0	0	1	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0015	2208	1	0	0	1	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0016	2208	1	0	1	0	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	t0017	2207	1	0	0	1	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP8_chr19_18526763_18548573	1/1	t0001	520	386	91	78	161	12	42	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	t0002	520	1	1	0	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	t0003	520	1	1	0	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	t0004	520	1	1	0	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	t0005	520	1	0	0	1	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP9_chr7_32952440_33011928	0/1	t0001	1711	72	0	13	51	1	6	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0002	1713	71	26	8	24	3	10	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	1/0	t0003	1712	61	0	10	43	1	6	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0004	1707	29	2	3	18	1	5	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0005	1712	25	21	4	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0006	1713	24	0	0	24	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0007	1713	22	1	14	4	2	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0008	1713	13	9	3	0	0	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0009	1710	12	0	0	12	0	0	copy fasta	FKBP9	chr7	32952440	33011928