JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FKBP9_chr7_32952440_33011928	0/0	t0010	1714	9	3	2	4	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0011	1713	8	2	2	2	0	2	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0012	1712	6	0	0	5	1	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0013	1712	6	6	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0014	1713	5	4	0	0	0	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0015	1708	5	3	2	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0016	1714	4	0	3	0	1	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0017	1713	4	4	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0018	1712	3	0	0	0	0	3	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0019	1712	2	2	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0020	1710	2	1	0	0	1	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0021	1712	2	0	0	0	1	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0022	1712	2	0	0	0	0	2	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0023	1713	2	0	0	2	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0024	1713	2	2	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0025	1713	2	0	0	2	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0026	1714	2	0	0	2	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0027	1712	2	2	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0028	1713	2	2	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0029	1713	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0030	1713	1	0	1	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0031	1714	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0032	1714	1	0	1	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0033	1713	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0034	1713	1	0	0	0	0	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0035	1710	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0036	1713	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0037	1712	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0038	1713	1	0	0	0	0	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0039	1714	1	0	0	0	0	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0040	1712	1	0	1	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0041	1713	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0042	1707	1	0	0	0	0	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0043	1707	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0044	1707	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0045	1708	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0046	1712	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0047	1712	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0048	1712	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0049	1713	1	0	1	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0050	1713	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0051	1713	1	0	1	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0052	1714	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0053	1713	1	0	1	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0054	1713	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0055	1713	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0056	1710	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0057	1711	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0058	1709	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	t0059	1711	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928