JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FKBPL_chr6_32123707_32135288	0/1	t0001	293	277	40	59	142	11	24	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	t0002	293	57	14	11	20	0	12	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	t0003	293	35	15	4	3	3	10	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	t0004	293	29	9	7	11	2	0	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	t0005	293	17	0	3	10	2	2	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	t0006	293	10	10	0	0	0	0	copy fasta	FKBPL	chr6	32123707	32135288
FKRP_chr19_46741057_46763575	1/0	t0001	1924	376	82	75	171	6	41	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/1	t0002	1924	26	5	8	0	7	5	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0003	1924	12	0	1	8	3	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0004	1924	4	3	1	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0005	1924	2	1	1	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0006	1924	2	0	0	0	0	2	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0007	1924	2	2	0	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0008	1924	1	0	0	1	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0009	1924	1	1	0	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0010	1924	1	1	0	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0011	1924	1	1	0	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0012	1924	1	0	0	1	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	t0013	1924	1	0	0	1	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKTN_chr9_105553131_105646118	1/0	t0001	6070	104	18	15	59	2	9	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0002	6070	83	10	12	55	3	3	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0003	6070	55	1	12	34	2	6	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/1	t0004	6070	30	10	11	3	3	2	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0005	6070	17	3	6	0	3	5	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0006	6069	16	14	1	0	0	1	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0007	6070	7	0	0	7	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0008	6070	5	0	1	4	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0009	6070	4	0	0	4	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0010	6070	4	4	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0011	6069	4	4	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0012	6070	4	3	1	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0013	6070	3	3	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0014	6069	2	2	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0015	6069	2	2	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0016	6070	2	0	0	0	0	2	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0017	6070	2	0	0	2	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0018	6069	2	2	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0019	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0020	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0021	6070	1	0	0	0	1	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0022	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0023	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0024	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0025	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0026	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0027	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0028	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0029	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0030	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0031	6106	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118