JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FKTN_chr9_105553131_105646118	0/0	t0032	6070	1	0	1	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0033	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0034	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0035	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0036	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0037	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0038	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0039	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0040	6070	1	0	0	0	0	1	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0041	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0042	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0043	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0044	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0045	6070	1	0	0	0	0	1	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0046	6070	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0047	6069	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0048	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0049	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	t0050	6070	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FLACC1_chr2_201283271_201362345	0/1	t0001	796	100	5	25	55	4	10	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	1/0	t0002	796	90	13	25	40	2	9	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0003	796	61	10	0	42	0	9	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0004	796	41	35	6	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0005	796	31	6	8	14	2	1	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0006	796	23	11	3	4	0	5	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0007	796	13	8	1	0	0	4	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0008	796	6	2	0	4	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0009	796	1	0	0	1	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0010	796	1	0	0	0	1	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0011	796	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0012	796	1	0	0	0	1	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	t0013	796	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLAD1_chr1_154978344_154998111	1/1	t0001	426	273	87	54	82	14	34	copy fasta	FLAD1	chr1	154978344	154998111
FLAD1_chr1_154978344_154998111	0/0	t0002	426	7	7	0	0	0	0	copy fasta	FLAD1	chr1	154978344	154998111
FLAD1_chr1_154978344_154998111	0/0	t0003	426	2	0	0	2	0	0	copy fasta	FLAD1	chr1	154978344	154998111
FLAD1_chr1_154978344_154998111	0/0	t0004	426	2	0	0	0	0	2	copy fasta	FLAD1	chr1	154978344	154998111
FLCN_chr17_17207212_17242168	0/1	t0001	1928	101	4	24	56	7	9	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	1/0	t0002	1928	66	13	11	29	1	11	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0003	1928	25	2	5	9	3	6	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0004	1929	18	0	0	14	0	4	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0005	1928	18	18	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0006	1927	14	1	8	5	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0007	1929	11	0	2	7	0	2	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0008	1929	10	4	2	2	0	2	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0009	1925	10	8	2	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0010	1929	8	5	2	0	0	1	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0011	1929	8	5	0	1	0	2	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0012	1929	6	0	1	3	0	2	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0013	1932	6	0	4	0	1	1	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0014	1929	6	4	2	0	0	0	copy fasta	FLCN	chr17	17207212	17242168