JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLCN_chr17_17207212_17242168	0/0	t0015	1928	5	0	1	0	3	1	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0016	1928	4	0	3	0	1	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0017	1930	3	0	0	3	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0018	1928	3	0	3	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0019	1928	3	0	3	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0020	1928	3	0	0	3	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0021	1928	2	0	0	1	0	1	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0022	1928	2	0	0	2	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0023	1927	2	0	0	1	0	1	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0024	1928	2	2	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0025	1929	2	2	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0026	1929	2	2	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0027	1929	2	2	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0028	1928	2	2	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0029	1928	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0030	1929	1	0	1	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0031	1928	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0032	1928	1	0	0	1	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0033	1929	1	0	0	1	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0034	1925	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0035	1932	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0036	1928	1	0	0	0	0	1	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0037	1927	1	0	1	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0038	1929	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0039	1928	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0040	1928	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0041	1929	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0042	1928	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0043	1928	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0044	1927	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0045	1928	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0046	1929	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0047	1929	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0048	1929	1	0	1	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0049	1928	1	0	0	1	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0050	1928	1	0	0	1	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0051	1929	1	0	0	1	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0052	1929	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0053	1929	1	1	0	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	t0054	1928	1	0	0	1	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLG2_chr1_152343735_152365006	1/1	t0001	1949	218	52	31	96	9	28	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0002	1949	147	23	34	79	1	10	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0003	1949	11	0	0	11	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0004	1949	9	0	0	9	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0005	1949	7	2	0	5	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0006	1949	4	4	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0007	1949	4	4	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0008	1949	3	0	0	3	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0009	1949	3	3	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0010	1949	3	3	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006