JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLG2_chr1_152343735_152365006	0/0	t0011	1949	3	0	0	0	0	3	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0012	1949	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0013	1949	1	0	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0014	1949	1	0	0	0	0	1	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0015	1949	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0016	1949	1	0	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0017	1949	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0018	1949	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0019	1949	1	0	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	t0020	1949	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG_chr1_152297165_152330239	0/1	t0001	608	405	76	71	197	14	46	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	t0002	608	12	12	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	t0003	608	6	6	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	t0004	608	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	t0005	608	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	1/0	t0006	608	1	0	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLI1_chr11_128689072_128818267	1/0	t0001	2467	220	53	38	100	3	25	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/1	t0002	2021	56	3	16	27	2	7	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0003	2467	15	14	1	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0004	2020	13	0	1	12	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0005	2020	9	8	1	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0006	2467	3	0	0	3	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0007	2467	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0008	2466	1	0	0	0	1	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0009	2467	1	0	0	0	0	1	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0010	2467	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0011	2467	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0012	2467	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0013	2466	1	0	0	1	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0014	2467	1	0	0	0	0	1	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0015	2467	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0016	2467	1	0	0	1	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0017	2467	1	0	1	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	t0018	2467	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLII_chr17_18239815_18263738	1/1	t0001	372	407	95	74	184	10	42	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	t0002	372	3	2	1	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	t0003	372	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	t0004	372	1	0	1	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLNA_chrX_154343531_154379634	1/1	t0001	564	197	38	36	88	10	23	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0002	566	49	17	18	11	1	2	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0003	564	12	12	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0004	564	8	0	0	8	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0005	565	2	1	0	0	0	1	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0006	567	2	1	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0007	567	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0008	568	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0009	564	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0010	566	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0011	563	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0012	566	1	0	0	0	0	1	copy fasta	FLNA	chrX	154343531	154379634