JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLNA_chrX_154343531_154379634	0/0	t0013	566	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0014	563	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	t0015	564	1	1	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNB_chr3_58003422_58177251	0/0	t0001	1633	88	28	20	24	3	13	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	1/1	t0002	1633	61	22	19	0	7	11	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0003	1633	11	10	1	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0004	1633	8	8	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0005	1633	2	2	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0006	1633	2	2	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0007	1633	1	0	0	0	0	1	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0008	1633	1	0	0	0	0	1	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0009	1633	1	0	0	1	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0010	1633	1	0	0	1	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0011	1633	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0012	1633	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0013	1633	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	t0014	1633	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNC_chr7_128825406_128864272	0/1	t0001	982	126	36	29	36	8	16	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0002	980	88	18	15	45	2	8	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0003	982	72	5	10	47	3	7	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0004	976	45	5	4	26	3	7	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0005	984	24	23	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0006	978	7	1	1	5	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0007	988	3	3	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0008	980	2	1	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0009	982	2	0	0	0	2	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0010	982	2	0	0	1	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0011	976	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0012	980	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0013	980	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0014	980	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0015	982	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0016	982	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0017	984	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0018	984	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0019	982	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0020	980	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0021	980	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	t0022	978	1	0	0	0	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	1/0	t0023	982	1	0	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLOT1_chr6_30722709_30747687	0/1	t0001	583	434	92	84	195	18	44	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	t0002	583	2	0	2	0	0	0	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	t0003	583	1	1	0	0	0	0	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	t0004	583	1	0	0	1	0	0	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	t0005	583	1	0	0	0	0	1	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	t0006	594	1	1	0	0	0	0	copy fasta	FLOT1	chr6	30722709	30747687
FLOT1_chr6_30722709_30747687	0/0	t0007	583	1	0	0	0	0	1	copy fasta	FLOT1	chr6	30722709	30747687
FLOT2_chr17_28874339_28902733	0/1	t0001	1382	231	16	54	120	13	27	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0002	1382	131	62	17	38	3	11	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	1/0	t0003	1382	31	0	6	24	0	0	copy fasta	FLOT2	chr17	28874339	28902733