JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLOT2_chr17_28874339_28902733	0/0	t0004	1382	6	3	2	0	0	1	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0005	1382	5	5	0	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0006	1382	4	0	0	4	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0007	1382	3	2	1	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0008	1382	3	3	0	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0009	1346	2	0	0	2	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0010	1382	1	0	0	0	0	1	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0011	1382	1	1	0	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0012	1382	1	0	0	0	0	1	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0013	1382	1	0	0	0	0	1	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0014	1382	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	t0015	1382	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLRT1_chr11_64030931_64124171	0/0	t0001	2146	52	12	5	33	2	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0002	2145	45	0	9	21	2	13	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/1	t0003	2146	37	7	17	11	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0004	2147	31	6	6	16	0	3	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0005	2147	26	26	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0006	2146	16	5	1	9	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	1/0	t0007	2146	15	13	1	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0008	2146	14	1	6	5	0	2	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0009	2145	6	0	0	6	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0010	2145	6	0	4	0	0	2	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0011	2147	4	0	0	0	0	4	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0012	2146	4	0	0	4	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0013	2146	3	0	0	0	0	3	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0014	2146	3	3	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0015	2145	3	0	2	0	1	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0016	2147	2	2	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0017	2147	2	2	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0018	2147	2	2	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0019	2146	2	0	0	2	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0020	2146	2	0	0	2	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0021	2146	2	0	0	2	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0022	2146	2	0	2	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0023	2146	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0024	2146	1	0	1	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0025	2147	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0026	2147	1	0	0	1	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0027	2147	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0028	2146	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0029	2146	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0030	2145	1	0	0	0	1	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0031	2146	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0032	2145	1	0	1	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0033	2147	1	0	0	1	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0034	2146	1	0	0	1	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0035	2145	1	0	1	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0036	2146	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0037	2147	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	t0038	2145	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171