Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKR1B15_chr7_134544110_134584869	1/0	t0001	607	356	89	73	144	10	39	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	t0002	607	34	0	1	32	0	1	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	t0003	607	9	8	1	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	t0004	607	1	0	1	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	t0005	607	1	0	0	1	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	t0006	607	1	1	0	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/1	t0007	607	1	0	0	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	t0008	607	1	0	0	1	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B1_chr7_134437356_134464100	1/1	t0001	411	441	96	75	204	16	48	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	t0002	411	3	0	3	0	0	0	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	t0003	411	1	0	0	0	0	1	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	t0004	411	1	0	0	0	0	1	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1C1_chr10_4958415_4988283	0/0	t0001	5572	83	0	9	67	1	6	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0002	5573	53	0	5	47	0	1	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/1	t0003	5572	18	1	6	4	3	3	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0004	5571	13	0	5	5	1	2	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0005	5572	11	0	1	4	0	6	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0006	5572	8	3	1	4	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0007	5572	7	0	1	6	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0008	5572	6	5	1	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0009	5572	6	0	0	6	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0010	5572	5	1	4	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0011	5572	5	0	1	4	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0012	5571	4	1	3	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0013	5571	4	0	2	0	0	2	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0014	5572	4	4	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0015	5571	3	0	2	0	1	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0016	5571	3	1	0	0	0	2	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0017	5571	3	3	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0018	5572	3	0	0	3	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0019	5572	3	3	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0020	5573	3	2	0	0	0	1	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0021	5573	3	0	2	0	1	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0022	5572	3	3	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0023	5572	3	0	0	0	0	3	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0024	5571	2	1	1	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0025	5571	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0026	5571	2	0	2	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0027	5571	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0028	5571	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0029	5571	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0030	5571	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0031	5571	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0032	5571	2	0	2	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0033	5572	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0034	5572	2	0	0	2	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0035	5572	2	0	0	2	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0036	5572	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0037	5572	2	0	2	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	t0038	5572	2	0	0	2	0	0	copy fasta	AKR1C1	chr10	4958415	4988283