JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLRT2_chr14_85525144_85659428	0/0	t0146	31741	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0147	31733	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0148	31744	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0149	31736	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0150	31740	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0151	31748	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0152	31728	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0153	31733	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0154	31690	1	0	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0155	31708	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0156	31695	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0157	31694	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0158	31689	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0159	31689	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0160	31703	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0161	31714	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0162	31707	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0163	31702	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0164	31714	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0165	31743	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0166	31692	1	0	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0167	31688	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0168	31709	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0169	31705	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0170	31703	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0171	31691	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0172	31703	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0173	31706	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0174	31694	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0175	31698	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0176	31689	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0177	31710	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0178	31705	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0179	31700	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0180	31695	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0181	31697	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0182	31733	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0183	31749	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0184	31732	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0185	31706	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0186	31707	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0187	31701	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0188	31760	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0189	31714	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0190	31690	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0191	31725	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0192	31710	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0193	31753	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0194	31738	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0195	31770	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428