JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLRT2_chr14_85525144_85659428	0/0	t0196	31714	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0197	31726	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0198	31726	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0199	31722	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0200	31715	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0201	31715	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0202	31718	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0203	31719	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0204	31712	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0205	31713	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0206	31714	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0207	31708	1	0	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0208	31720	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0209	31722	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0210	31703	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0211	31714	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0212	31720	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0213	31702	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0214	31718	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0215	31720	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0216	31709	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0217	31702	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0218	31714	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0219	31710	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0220	31707	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0221	31715	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0222	31719	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0223	31711	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0224	31725	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0225	31717	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0226	31711	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0227	31715	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0228	31687	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0229	31760	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0230	31715	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0231	31718	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0232	31748	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0233	31764	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0234	31714	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0235	31732	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0236	31698	1	0	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0237	31692	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0238	31701	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0239	31685	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0240	31700	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	1/0	t0241	31699	1	0	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0242	31683	1	0	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0243	31687	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0244	31725	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0245	31738	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428