JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
FLRT2_chr14_85525144_85659428	0/0	t0246	31729	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0247	31701	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0248	31704	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0249	31684	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0250	31688	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0251	31687	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0252	31749	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0253	31748	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0254	31753	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0255	31751	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0256	31734	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0257	31743	1	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0258	31747	1	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0259	31746	1	0	0	0	1	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0260	31752	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0261	31732	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0262	31712	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0263	31714	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0264	31713	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0265	31712	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0266	31750	1	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0267	31732	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0268	31747	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0269	31748	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0270	31746	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0271	31744	1	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0272	31750	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0273	31733	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0274	31718	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0275	31742	1	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0276	31745	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0277	31741	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0278	31743	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0279	31743	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0280	31748	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0281	31743	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0282	31756	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0283	31704	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0284	31746	1	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0285	31735	1	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0286	31735	1	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0287	31739	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0288	31734	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0289	31757	1	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0290	31714	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0291	31702	1	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0292	31740	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0293	31718	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0294	31734	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0295	31742	1	1	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428