JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLRT2_chr14_85525144_85659428	0/0	t0296	31698	1	0	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0297	31705	1	0	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0298	31708	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0299	31732	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0300	31731	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0301	31726	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0302	31718	1	0	0	0	1	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0303	31765	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0304	31745	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0305	31743	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0306	31727	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0307	31729	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0308	31706	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0309	31709	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0310	31755	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0311	31742	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	t0312	31703	1	0	0	1	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT3_chr20_14317985_14342612	0/0	t0001	3027	100	15	9	61	4	11	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0002	3027	78	9	14	49	1	5	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	1/0	t0003	3028	75	15	8	42	5	4	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0004	3027	50	1	17	17	4	11	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/1	t0005	3027	50	18	13	13	1	4	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0006	3025	9	0	0	9	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0007	3028	8	0	2	3	1	2	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0008	3026	7	7	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0009	3027	6	6	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0010	3027	5	4	1	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0011	3026	4	3	1	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0012	3028	4	3	0	0	0	1	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0013	3026	4	0	2	0	0	2	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0014	3028	3	0	0	1	0	2	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0015	3027	3	0	3	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0016	3028	2	2	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0017	3027	2	0	0	2	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0018	3027	2	0	1	0	0	1	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0019	3027	2	0	2	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0020	3027	1	0	0	0	0	1	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0021	3027	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0022	3024	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0023	3028	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0024	3026	1	0	0	0	1	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0025	3028	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0026	3029	1	1	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0027	3027	1	1	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0028	3029	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0029	3028	1	1	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0030	3027	1	1	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0031	3027	1	0	0	0	1	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0032	3027	1	0	1	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0033	3028	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612