JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLRT3_chr20_14317985_14342612	0/0	t0034	3027	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	t0035	3027	1	1	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLT1_chr13_28295346_28500128	0/1	t0001	3101	96	27	13	29	8	18	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0002	3101	18	0	9	1	2	6	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0003	3100	11	0	4	6	0	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0004	3115	9	2	2	5	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0005	3104	7	7	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0006	3105	6	6	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0007	3106	5	3	2	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0008	3117	5	4	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0009	3114	4	3	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0010	3113	4	3	0	0	0	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0011	3105	4	2	2	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	1/0	t0012	3107	4	3	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0013	3098	3	2	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0014	3114	3	3	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0015	3115	3	3	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0016	3103	3	1	0	0	1	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0017	3111	2	2	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0018	3101	2	2	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0019	3106	2	2	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0020	3115	2	0	0	2	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0021	3117	2	0	0	2	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0022	3101	2	0	0	0	0	2	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0023	3115	2	0	0	2	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0024	3101	2	0	1	0	0	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0025	3100	2	0	2	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0026	3101	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0027	3112	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0028	3106	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0029	3112	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0030	3119	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0031	3114	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0032	3113	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0033	3111	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0034	3104	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0035	3105	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0036	3106	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0037	3103	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0038	3116	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0039	3118	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0040	3101	1	0	0	0	0	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0041	3101	1	0	0	0	0	1	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0042	3104	1	0	0	0	1	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0043	3101	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0044	3095	1	0	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0045	3101	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0046	3107	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0047	3113	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0048	3099	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128