JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLT1_chr13_28295346_28500128	0/0	t0049	3119	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	t0050	3101	1	0	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT3LG_chr19_49469215_49491231	1/0	t0001	343	184	9	45	88	9	32	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/1	t0002	343	143	78	27	24	3	10	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/0	t0003	343	4	4	0	0	0	0	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/0	t0004	343	1	1	0	0	0	0	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3_chr13_27998274_28105576	1/0	t0001	845	146	46	34	48	6	11	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	t0002	845	125	27	21	47	6	24	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/1	t0003	845	8	3	0	0	3	1	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	t0004	845	3	3	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	t0005	845	3	3	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	t0006	845	3	2	1	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	t0007	845	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	t0008	845	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	t0009	845	1	0	0	0	1	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	t0010	845	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT4_chr5_180596506_180654600	0/0	t0001	1742	163	19	53	55	14	22	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0002	1742	59	23	12	22	0	2	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0003	1742	32	3	1	27	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0004	1742	30	2	1	22	0	5	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0005	1742	22	1	2	14	2	3	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0006	1742	13	1	4	1	0	7	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0007	1742	11	11	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0008	1742	5	4	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0009	1742	5	5	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0010	1742	5	4	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0011	1742	5	5	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0012	1742	5	2	1	0	2	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0013	1742	4	4	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0014	1742	3	0	1	1	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0015	1742	3	2	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0016	1742	3	0	0	3	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0017	1742	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0018	1742	2	0	0	2	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0019	1742	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0020	1742	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0021	1742	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0022	1764	1	0	0	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0023	1742	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0024	1742	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0025	1742	1	0	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0026	1742	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0027	1742	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0028	1742	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0029	1742	1	0	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0030	1742	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0031	1742	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0032	1742	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	t0033	1742	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLVCR1_chr1_212853275_212904363	0/0	t0001	4213	32	1	4	19	7	1	copy fasta	FLVCR1	chr1	212853275	212904363