JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLVCR1_chr1_212853275_212904363	0/0	t0002	4238	30	0	8	19	0	3	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0003	4214	22	1	4	16	1	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0004	4208	21	0	2	15	0	4	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0005	4239	20	2	6	9	3	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/1	t0006	4237	20	0	0	17	0	2	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0007	4209	11	3	0	5	0	3	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	1/0	t0008	4252	8	1	1	0	0	5	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0009	4273	8	3	1	0	3	1	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0010	4240	7	0	3	4	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0011	4235	7	0	0	7	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0012	4260	6	5	0	0	0	1	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0013	4215	6	0	0	4	0	2	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0014	4236	5	0	0	5	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0015	4236	5	2	1	2	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0016	4260	5	3	2	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0017	4243	5	0	5	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0018	4257	4	0	2	0	0	2	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0019	4256	4	1	1	0	2	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0020	4224	4	0	0	0	0	4	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0021	4222	4	0	0	4	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0022	4208	3	1	0	2	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0023	4280	3	1	2	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0024	4271	3	3	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0025	4275	3	1	2	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0026	4272	3	3	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0027	4202	3	2	1	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0028	4262	3	0	0	3	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0029	4265	3	0	0	3	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0030	4260	3	0	0	3	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0031	4264	3	0	0	3	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0032	4213	3	0	0	3	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0033	4246	2	0	1	0	0	1	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0034	4239	2	0	0	2	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0035	4221	2	2	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0036	4259	2	2	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0037	4259	2	2	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0038	4259	2	2	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0039	4275	2	1	0	0	1	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0040	4212	2	2	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0041	4213	2	0	0	2	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0042	4208	2	0	2	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0043	4222	2	0	2	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0044	4223	2	0	0	2	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0045	4275	2	2	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0046	4266	2	0	0	2	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0047	4261	2	0	0	2	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0048	4238	1	0	0	1	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0049	4253	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0050	4213	1	0	1	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0051	4209	1	0	0	0	1	0	copy fasta	FLVCR1	chr1	212853275	212904363