JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLVCR1_chr1_212853275_212904363	0/0	t0102	4276	1	0	1	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0103	4272	1	0	0	1	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0104	4257	1	0	0	1	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0105	4258	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0106	4258	1	0	1	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0107	4258	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0108	4245	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0109	4273	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0110	4275	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0111	4272	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0112	4268	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0113	4254	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0114	4254	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0115	4256	1	1	0	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0116	4264	1	0	0	1	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0117	4214	1	0	0	1	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	t0118	4214	1	0	0	1	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR2_chr14_75573620_75653167	0/0	t0001	2049	109	35	17	44	5	8	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	1/1	t0002	2049	105	3	24	51	6	19	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0003	2047	48	15	9	16	5	3	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0004	2049	44	14	7	22	0	1	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0005	2049	3	3	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0006	2047	3	3	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0007	2049	2	0	1	0	0	1	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0008	2049	2	1	1	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0009	2049	2	0	2	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0010	2047	2	2	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0011	2049	1	0	1	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0012	2049	1	1	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0013	2049	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0014	2049	1	0	0	0	0	1	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0015	2049	1	1	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0016	2049	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0017	2049	1	1	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0018	2049	1	0	0	0	0	1	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0019	2049	1	1	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0020	2049	1	0	0	0	0	1	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0021	2049	1	0	1	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0022	2047	1	0	1	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0023	2047	1	1	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0024	2047	1	0	0	0	0	1	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0025	2047	1	1	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	t0026	2049	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLYWCH1_chr16_2906931_2956208	0/0	t0001	2893	42	2	3	36	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0002	2895	36	1	7	18	0	10	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0003	2893	35	0	10	18	4	3	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0004	2895	30	3	15	9	1	2	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/1	t0005	2895	28	1	6	16	1	3	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0006	2893	22	2	7	11	0	2	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0007	2893	21	0	0	19	0	2	copy fasta	FLYWCH1	chr16	2906931	2956208