JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FLYWCH1_chr16_2906931_2956208	0/0	t0008	2895	10	4	6	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0009	2895	10	0	0	10	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0010	2893	10	10	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0011	2893	9	9	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0012	2895	7	1	0	6	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0013	2895	5	0	0	3	0	2	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0014	2895	5	0	0	3	2	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0015	2893	5	0	4	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0016	2893	5	5	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0017	2893	5	0	1	0	1	3	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0018	2893	5	0	0	3	2	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0019	2893	5	1	0	0	0	4	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0020	2895	4	4	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0021	2893	4	4	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0022	2893	4	0	4	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0023	2893	4	4	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0024	2895	3	0	1	1	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0025	2895	3	3	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0026	2893	3	0	1	0	1	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0027	2893	3	1	0	0	1	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0028	2893	3	0	0	3	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0029	2893	3	3	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0030	2893	3	0	2	0	1	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0031	2895	2	0	2	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0032	2895	2	0	2	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0033	2895	2	1	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0034	2895	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0035	2895	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0036	2893	2	0	1	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0037	2893	2	0	0	2	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0038	2893	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0039	2893	2	0	0	1	1	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0040	2893	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0041	2893	2	0	2	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0042	2893	2	0	2	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0043	2893	2	0	0	2	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0044	2893	2	0	1	0	1	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0045	2893	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0046	2893	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0047	2893	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0048	2893	1	0	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0049	2895	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0050	2895	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0051	2895	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0052	2895	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0053	2895	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0054	2895	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0055	2895	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0056	2895	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	t0057	2895	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208